Not yet. I talked to a "representative" at Sony who were not all that helpful, but he thought it might have something to do with the A/V receiver since my TV does have ARC (audio return) and I use that with my receiver. Thus, even though I have my PC plugged directly into my TV, the ARC is still sending a signal to the receiver which may be distorting the signal somehow.
I have completely disconnected my receiver, and I haven't noticed the flickering I was getting at least, although it hasn't been that long so we'll see if it solved that issue. My native resolution is still reading 1080p in windows.
I am going to delete my monitor/GPU in windows 10 and completely re-install here soon, with the A/V receiver completely disconnected from TV, as my initial setup with monitor/GPU was with receiver connected. Hoping this fixes my native resolution issue, but we'll see. I have been extremely busy with work for the past few days, so I haven't gotten around to it yet, but will report back here when I do.
Also, the rep thought it was interesting that windows was reading my Sony TV has Sony TV(02). I do have a Sony receiver as well, and since when I initially installed my TV in windows 10, it was plugged into the receiver, he was thinking that somehow the receiver was installed as TV(01) and caused my actual TV to get installed as (02) which could be screwing things up. Regardless, doing a fresh install of monitor/GPU should fix this issue if this is indeed the cause.