Hope this helps I dont have a q100E now but had one in the past.
Firstly there is no main volume you have a high level gain and a low level gain, they adjust independantly of each other. If you are using the LFE then you are using the low level gain only. Turn the high level gain down to minimum, this reduces noise, turn your frequency high and your low level volume low. Test with a film or audio track that you know well. Now it gets harder, you need to turn the volume up untill you hear the bass then turn the frequency down to a point where it matches in with your main speakers, problem is as you turn the frequency down the volume level goes down as well, so then you have to adjust the volume again.
At this point you should be in the right sort of area and over a couple of days you need to tweak the frequency and the volume, hopefully you will find a point where you cross the clairvoyants palm with siver ( The happy Medium ). Remember if you have a sealed enclosure if you adjust the frequency cut off under Fb you will get bass eq
In any case its all trial and error, and if im wrong I know another forum member will shoot me down,
Good luck