Just for info purposes, as many people will come across this problem - a microphone doesnt just pick up the sound of your speakers during an auto setup - it picks up the altered sound of the speakers due to the room and wall boundaries. Put any small speaker close to a wall and you get a much greater bass output, which the mic can then pick up as a large speaker. Room EQ generally works on the goal of producing a flat response, and no EQ system (unless programmed to do so) can know what your speaker's natural response should sound like. This must be the next step for EQ, as once an EQ system knows exactly what your speakers are supposed to sound like, only then can it effectively remove what isn't supposed to be there.
Small speakers like the Q7000s should be set manually (after an auto set up is run) to around 80-100Hz minimum. You can then experiment from there for the best crossover point to suit your speakers/sub or preference.